SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
ACACGGCCAAGGGGCCAAGGGGAAAAAC
1._GC-01-43-2-20
ACACGGCCAAGGGGCCAAGGGGAAAAAC
2._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
3._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
4._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
5._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
6._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
7._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
8._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
9._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
10._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
11._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
12._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
13._RB_37_[BRA]
_____CCGG_AA_____
14._RB_37_[BRA]
_____CCGG_AA_____
15._RB_37_[BRA]
_____CCGG_AA_____
16._RB_37_[BRA]
_____CCGG_AA_____
17._RB_37_[BRA]
_____CCGG_AA_____
18._RB_37_[BRA]
_____CCGG_AA_____
19._RB_37_[BRA]
_____CCGG_AA_____
20._RB_37_[BRA]
_____CCGG_AA_____
21._RB_37_[BRA]
_____CCGG_AA_____
22._RB_37_[BRA]
_____CCGG_AA_____
23._RB_37_[BRA]
_____CCGG_AA_____
24._RB_37_[BRA]
_____CTGG_AA_____
25._RUQ_1705
______GG_______
26._RB_37_[BRA]
_____CTGG_AA_____
27._RUQ_135
_____CTGG_AA_____
 1516171819202122232425262728
_Input profile
AGCCAAAGAAGGAGGGCCGGGGAACCAA
1._GC-01-43-2-20
AGCCAAAG_GGAGGGCCGGGGAACCAA
2._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
3._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
4._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
5._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
6._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
7._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
8._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
9._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
10._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
11._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
12._GC-01-043-2-20
CTGGTTTTAAGGCTCCCCCCCCAAGGTT
13._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
14._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
15._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
16._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
17._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
18._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
19._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
20._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
21._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
22._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
23._RB_37_[BRA]
_GGTT_AA_CT_CCCCCCAAGGTT
24._RB_37_[BRA]
_GGTT_AA_CC_ACCCCCAAGGCC
25._RUQ_1705
_GG______AC_CC___
26._RB_37_[BRA]
_GGTT_AA_CC_ACCTCCAAGG_
27._RUQ_135
_GGTT_AA_CC_ACCCCCAGGGCC
 2930313233343536373839404142
_Input profile
GGATGGCCCCAAGGAAGGCCAAAAAGGG
1._GC-01-43-2-20
GGATGGCCCCAAGGAAGGCCAAAAAGGG
2._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
3._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
4._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
5._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
6._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
7._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
8._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
9._GC-01-043-2-20
CCATGG_GGAAGGTTGGGGTTAAAGGG
10._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
11._GC-01-043-2-20
CCATGGCCGGAAGGTTGGGGTTAAAGGG
12._GC-01-043-2-20
CCATGG_GGAAGGCCGGGGTTAAAGGG
13._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
14._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
15._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
16._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
17._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
18._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
19._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
20._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
21._RB_37_[BRA]
CC__CCGGAA_TTGG__AA__
22._RB_37_[BRA]
CC___GGAA_CCGG__AA__
23._RB_37_[BRA]
CC___GGAA_TTGG__AA__
24._RB_37_[BRA]
___CC_AA_CTGG__AA__
25._RUQ_1705
_____AA______AG_
26._RB_37_[BRA]
CC__CC_AA_CTGG__AA__
27._RUQ_135
CC__CCGGAA_CTGG__AA__
 4344454647484950515253545556
_Input profile
AAGGAAGGGGAACCAGACCCAACCGGCG
1._GC-01-43-2-20
AAGGAAGGGGAACCAGACCCAACCGGCG
2._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
3._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
4._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
5._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
6._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
7._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
8._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
9._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
10._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGG_GG
11._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
12._GC-01-043-2-20
AACCAAGGGGAAGG_ACCCAAGGGGGG
13._RB_37_[BRA]
AA___GG____CC_GG_GG
14._RB_37_[BRA]
AA___GG____CC_GG_GG
15._RB_37_[BRA]
AA___GG____CC_GG_GG
16._RB_37_[BRA]
AA___GG____CC_GG_GG
17._RB_37_[BRA]
AA___GG____CC_GG_GG
18._RB_37_[BRA]
AA___GG____CC_GG_GG
19._RB_37_[BRA]
AA___GG____CC_GG_GG
20._RB_37_[BRA]
AA___GG____CC_GG_GG
21._RB_37_[BRA]
AA___GG____CC_GG_GG
22._RB_37_[BRA]
AA___GG____CC_GG_GG
23._RB_37_[BRA]
AA___GG____CC_GG_GG
24._RB_37_[BRA]
AA___GG____AC___GG
25._RUQ_1705
_________AA___GG
26._RB_37_[BRA]
AA________AC_GG_GG
27._RUQ_135
AA___GG____AC_GG_GG
 5758596061626364656667686970
_Input profile
ACGGGGGGAAAACCAAAACCACAACCCC
1._GC-01-43-2-20
ACGGGGGGAAAACCAAAACCACAACCCC
2._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
3._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
4._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
5._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
6._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
7._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
8._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
9._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
10._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
11._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
12._GC-01-043-2-20
ACCCCCCCAAGGGGAATTGGGTTTCCGG
13._RB_37_[BRA]
AC__CC__GG_______
14._RB_37_[BRA]
AC__CC__GG_______
15._RB_37_[BRA]
AC__CC__GG_______
16._RB_37_[BRA]
AC__CC__GG_______
17._RB_37_[BRA]
AC__CC__GG_______
18._RB_37_[BRA]
AC__CC__GG_______
19._RB_37_[BRA]
AC__CC__GG_______
20._RB_37_[BRA]
AC__CC__GG_______
21._RB_37_[BRA]
AC__CC__GG_______
22._RB_37_[BRA]
AC__CC__GG_______
23._RB_37_[BRA]
AC__CC__GG_______
24._RB_37_[BRA]
CC__CC__GG_______
25._RUQ_1705
CC_CC___GGAA____ACTT
26._RB_37_[BRA]
CC__CC__GG_______
27._RUQ_135
CC__CC__GG_______
 717273747576777879808182  
_Input profile
AACCAAGGAGCCAAGGGGAAGGAAX_XX_X
1._GC-01-43-2-20
AACCAAGGAGCCAAGGGGAAGGAAX_XX_X
2._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
3._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
4._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
5._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
6._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
7._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
8._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
9._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
10._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
11._GC-01-043-2-20
AAGGTTCC_CCTTGGCCAACCAAX_XX_X
12._GC-01-043-2-20
AAGGTTCCAGCCTTGGCCAACCAAX_XX_X
13._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
14._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
15._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
16._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
17._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
18._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
19._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
20._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
21._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
22._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
23._RB_37_[BRA]
_GGTT___TTGG_AACCAAX_XX_X
24._RB_37_[BRA]
_GGTT___CTCG_AACCAAX_XX_X
25._RUQ_1705
_GG__GG______AAX_XX_X
26._RB_37_[BRA]
_GGTT___CTCG_AACCAAX_XX_X
27._RUQ_135
_GGCT___CTCG_AACCAAX_XX_X

Input profile: RB_37_[BRA] GC-01-43-2-20

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

1._RB_37_[BRA] GC-01-43-2-20

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

14._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

16._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

17._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

18._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

19._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

20._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

21._RB_37_[BRA]

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

22._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

23._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

24._RB_37_[BRA]

45.3 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_1705

44.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._RB_37_[BRA]

42.2 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._RB_37_[BRA] RUQ_135

40 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998